PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00119.54
Common NameAMTR_s00119p00074870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ZF-HD
Protein Properties Length: 155aa    MW: 17055.1 Da    PI: 9.587
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00119.54genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.63.4e-2987141358
                              ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                               vrYkeC+kNhAas+Gg++vDGC+Ef++  geegtaaal+CaAC CHRnFH+re++
  evm_27.model.AmTr_v1.0_scaffold00119.54  87 LVRYKECRKNHAASVGGYSVDGCREFLAG-GEEGTAAALTCAACSCHRNFHKREED 141
                                              69**************************8.999********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-1179149IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.9E-2988140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-2489139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.06490139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MKVGSSTYYK IRAWLLFCSF FPHMPSSSTS TNTQFQKKSK NTGTQAFEDQ QQALESRTNS  60
TSTMRPQEAP KSTSQEPMRI SNGNKKLVRY KECRKNHAAS VGGYSVDGCR EFLAGGEEGT  120
AAALTCAACS CHRNFHKREE DGVCQCSSKS TSKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931461.13e-33PREDICTED: mini zinc finger protein 1-like
TrEMBLW1NNC41e-113W1NNC4_AMBTC; Uncharacterized protein
STRINGPOPTR_0004s12510.16e-32(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.12e-16mini zinc finger 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]